PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G12560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 294aa    MW: 31267.8 Da    PI: 5.4445
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G12560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10183241563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l++e+
  LPERR09G12560.1 183 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTTGLTTEN 241
                      9********************************************99998877777666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-16179243IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.852181244IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.98E-11183235No hitNo description
PfamPF001704.7E-9183235IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-10183238No hitNo description
CDDcd147031.42E-22184233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNREKSPIPA DGGAGAGDGL PPPPPSSRRP PPPSSSTPPP EYDISRMPDF PTRNPGHRRA  60
HSEILSLPED LDLCAAGAGD GDGPSLSDEN DEELFSMFLD VEKLNNSSEA EAESSSAGAA  120
AAAAAAAHGQ RPKHQHSQSM DESMSIKAEE LVGAPGTEGM SSAEAKKAVS AAKLAELALV  180
DPKRAKRIWA NRQSAARSKE RKMRYIAELE RKVQTLQTEA TTLSAQLALL QRDTTGLTTE  240
NSELKIRLQT MEQQVHLQDA LNDTLKTEVQ RLKVATGQMA NGGGAGAQHK DVLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027950.0AK102795.1 Oryza sativa Japonica Group cDNA clone:J033108B13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576732.11e-152PREDICTED: transcription factor RF2a-like
RefseqXP_014758763.11e-152PREDICTED: transcription factor RF2a-like
SwissprotQ69IL41e-150RF2A_ORYSJ; Transcription factor RF2a
TrEMBLA0A0D9XFN30.0A0A0D9XFN3_9ORYZ; Uncharacterized protein
STRINGBRADI4G35240.11e-151(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42693868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.14e-62bZIP family protein